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Description : component *(eS8) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0001226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001226_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.7G057900.1 | |
| Cluster | HCAA Clusters: Cluster_37 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_00086 | No alias | 40s ribosomal protein s8 | 0.16 | Orthogroups_2024-Update | |
| A4A49_00202 | No alias | 40s ribosomal protein s8 | 0.14 | Orthogroups_2024-Update | |
| A4A49_17431 | No alias | 40s ribosomal protein s8 | 0.11 | Orthogroups_2024-Update | |
| A4A49_61985 | No alias | 40s ribosomal protein s8 | 0.04 | Orthogroups_2024-Update | |
| A4A49_62566 | No alias | 40s ribosomal protein s8 | 0.09 | Orthogroups_2024-Update | |
| Bradi1g51357 | No alias | Ribosomal protein S8e family protein | 0.13 | Orthogroups_2024-Update | |
| Bradi3g43560 | No alias | Ribosomal protein S8e family protein | 0.13 | Orthogroups_2024-Update | |
| Brara.B00878.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Brara.C00929.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Brara.J01583.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Cre06.g272800 | No alias | Ribosomal protein S8e family protein | 0.19 | Orthogroups_2024-Update | |
| GRMZM2G030228 | No alias | Ribosomal protein S8e family protein | 0.09 | Orthogroups_2024-Update | |
| GRMZM2G336875 | No alias | Ribosomal protein S8e family protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.03G086400 | No alias | Ribosomal protein S8e family protein | 0.13 | Orthogroups_2024-Update | |
| Glyma.08G346500 | No alias | Ribosomal protein S8e family protein | 0.07 | Orthogroups_2024-Update | |
| Glyma.16G087700 | No alias | Ribosomal protein S8e family protein | 0.11 | Orthogroups_2024-Update | |
| Glyma.18G157300 | No alias | Ribosomal protein S8e family protein | 0.12 | Orthogroups_2024-Update | |
| HORVU2Hr1G067370.5 | No alias | Unknown function | 0.16 | Orthogroups_2024-Update | |
| Kfl00279_0040 | kfl00279_0040_v1.1 | (p49199|rs8_orysa : 268.0) 40S ribosomal protein S8 -... | 0.06 | Orthogroups_2024-Update | |
| LOC_Os02g28810 | No alias | ribosomal protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os04g28180 | No alias | ribosomal protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_9738483g0010 | No alias | (p49199|rs8_orysa : 198.0) 40S ribosomal protein S8 -... | 0.02 | Orthogroups_2024-Update | |
| Mp2g16300.1 | No alias | component RPS8 of SSU proteome | 0.11 | Orthogroups_2024-Update | |
| PSME_00001605-RA | No alias | (q08069|rs8_maize : 279.0) 40S ribosomal protein S8 -... | 0.08 | Orthogroups_2024-Update | |
| Potri.001G262100 | No alias | Ribosomal protein S8e family protein | 0.06 | Orthogroups_2024-Update | |
| Potri.009G056900 | No alias | Ribosomal protein S8e family protein | 0.04 | Orthogroups_2024-Update | |
| Potri.017G110000 | No alias | Ribosomal protein S8e family protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s162_83V6 | No alias | 40s ribosomal protein | 0.12 | Orthogroups_2024-Update | |
| Pp1s223_73V6 | No alias | 40s ribosomal protein | 0.07 | Orthogroups_2024-Update | |
| Pp1s227_85V6 | No alias | 40s ribosomal protein | 0.1 | Orthogroups_2024-Update | |
| Pp1s292_14V6 | No alias | 40s ribosomal protein | 0.21 | Orthogroups_2024-Update | |
| Pp1s46_183V6 | No alias | 40s ribosomal protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G314000.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Sobic.004G244800.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.23 | Orthogroups_2024-Update | |
| Sobic.006G035900.1 | No alias | component *(eS8) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Solyc06g007570 | No alias | 40S ribosomal protein S8 (AHRD V3.3 *** K4C3D8_SOLLC) | 0.16 | Orthogroups_2024-Update | |
| Solyc06g083180 | No alias | 40S ribosomal protein S8 (AHRD V3.3 *** K4CAH3_SOLLC) | 0.12 | Orthogroups_2024-Update | |
| Solyc07g065170 | No alias | 40S ribosomal protein S8 (AHRD V3.3 *** K4CHJ6_SOLLC) | 0.11 | Orthogroups_2024-Update | |
| Solyc09g057650 | No alias | 40S ribosomal protein S8 (AHRD V3.3 *** K4CTF6_SOLLC) | 0.09 | Orthogroups_2024-Update | |
| Solyc10g006070 | No alias | 40S ribosomal protein S8 (AHRD V3.3 *** K4CXD9_SOLLC) | 0.04 | Orthogroups_2024-Update | |
| Sopen06g002470 | No alias | Ribosomal protein S8e | 0.16 | Orthogroups_2024-Update | |
| Sopen06g034570 | No alias | Ribosomal protein S8e | 0.11 | Orthogroups_2024-Update | |
| Sopen07g033390 | No alias | Ribosomal protein S8e | 0.15 | Orthogroups_2024-Update | |
| Sopen09g021090 | No alias | Ribosomal protein S8e | 0.1 | Orthogroups_2024-Update | |
| Sopen10g002020 | No alias | Ribosomal protein S8e | 0.13 | Orthogroups_2024-Update | |
| evm.model.contig_4462.6 | No alias | (q08069|rs8_maize : 255.0) 40S ribosomal protein S8 -... | 0.25 | Orthogroups_2024-Update | |
| evm.model.tig00020610.79 | No alias | (p49199|rs8_orysa : 269.0) 40S ribosomal protein S8 -... | 0.13 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004826 | phenylalanine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004827 | proline-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006432 | phenylalanyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| BP | GO:0016458 | gene silencing | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022309 | Ribosomal_S8e/biogenesis_NSA2 | 5 | 199 |
| No external refs found! |