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  5. Seita.7G058000.1

Seita.7G058000.1


Description : Unknown function


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G058000.1
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14190 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g38453 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
GRMZM2G416201 No alias rna processing factor 2 0.05 Orthogroups_2024-Update
HORVU1Hr1G013810.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G014030.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G167800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G204600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G054200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G024600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G027600.2 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 389 419
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 148 195
IPR002885 Pentatricopeptide_repeat 569 615
IPR002885 Pentatricopeptide_repeat 537 562
IPR002885 Pentatricopeptide_repeat 114 140
IPR002885 Pentatricopeptide_repeat 432 461
IPR033443 PPR_long 226 388
No external refs found!