Seita.7G078800.1

Description : component *(uL11) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001717_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.7G078800.1
Cluster	HCAA Clusters: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
227409	No alias	Ribosomal protein L11 family protein	0.15	Orthogroups_2024-Update
A4A49_09340	No alias	60s ribosomal protein l12	0.08	Orthogroups_2024-Update
A4A49_19100	No alias	60s ribosomal protein l12	0.04	Orthogroups_2024-Update
A4A49_58419	No alias	60s ribosomal protein l12	0.12	Orthogroups_2024-Update
AC196489.3_FG002	No alias	Ribosomal protein L11 family protein	0.08	Orthogroups_2024-Update
At3g53430	No alias	60S ribosomal Protein L12-like...	0.06	Orthogroups_2024-Update
At5g60670	No alias	60S ribosomal protein L12-3...	0.05	Orthogroups_2024-Update
Bradi3g52460	No alias	Ribosomal protein L11 family protein	0.11	Orthogroups_2024-Update
Bradi5g20330	No alias	Ribosomal protein L11 family protein	0.1	Orthogroups_2024-Update
Brara.C01863.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.D00531.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Brara.D02258.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Brara.G01587.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.I03633.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.J01420.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Cre12.g528750	No alias	Ribosomal protein L11 family protein	0.1	Orthogroups_2024-Update
GRMZM2G054201	No alias	Ribosomal protein L11 family protein	0.09	Orthogroups_2024-Update
GRMZM2G121075	No alias	Ribosomal protein L11 family protein	0.12	Orthogroups_2024-Update
GRMZM2G438814	No alias	Ribosomal protein L11 family protein	0.11	Orthogroups_2024-Update
Glyma.10G053100	No alias	Ribosomal protein L11 family protein	0.15	Orthogroups_2024-Update
Glyma.11G146300	No alias	Ribosomal protein L11 family protein	0.04	Orthogroups_2024-Update
Glyma.12G075500	No alias	Ribosomal protein L11 family protein	0.09	Orthogroups_2024-Update
Glyma.13G140100	No alias	Ribosomal protein L11 family protein	0.06	Orthogroups_2024-Update
HORVU2Hr1G102610.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
HORVU6Hr1G067870.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Kfl00125_0170	kfl00125_0170_v1.1	(at2g37190 : 245.0) Ribosomal protein L11 family...	0.09	Orthogroups_2024-Update
LOC_Os02g47140	No alias	L11 domain containing ribosomal protein, putative, expressed	0.07	Orthogroups_2024-Update
LOC_Os04g50990	No alias	L11 domain containing ribosomal protein, putative, expressed	0.07	Orthogroups_2024-Update
MA_10427147g0010	No alias	(at5g60670 : 270.0) Ribosomal protein L11 family...	0.07	Orthogroups_2024-Update
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.07	Orthogroups_2024-Update
Pp1s104_128V6	No alias	60s ribosomal protein l12	0.18	Orthogroups_2024-Update
Pp1s14_191V6	No alias	60s ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s242_7V6	No alias	60s ribosomal protein l12	0.15	Orthogroups_2024-Update
Pp1s280_55V6	No alias	60s ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s280_63V6	No alias	60s ribosomal protein l12	0.02	Orthogroups_2024-Update
Pp1s78_212V6	No alias	60s ribosomal protein l12	0.23	Orthogroups_2024-Update
Seita.1G284700.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Sobic.004G271400.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Sobic.006G057200.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Sobic.006G201500.1	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Solyc06g075180	No alias	60S ribosomal protein L12 (AHRD V3.3 *** K7WTX4_SOLTU)	0.13	Orthogroups_2024-Update
Solyc11g065670	No alias	60S ribosomal protein L12 (AHRD V3.3 *** Q6RJY1_CAPAN)	0.22	Orthogroups_2024-Update
Solyc11g069440	No alias	60S ribosomal protein L12 (AHRD V3.3 *** Q6RJY1_CAPAN)	0.07	Orthogroups_2024-Update
Sopen06g031590	No alias	Ribosomal protein L11, N-terminal domain	0.15	Orthogroups_2024-Update
Sopen11g025410	No alias	Ribosomal protein L11, N-terminal domain	0.21	Orthogroups_2024-Update
Sopen11g028160	No alias	Ribosomal protein L11, N-terminal domain	0.07	Orthogroups_2024-Update
evm.model.contig_2343.1	No alias	(at5g60670 : 215.0) Ribosomal protein L11 family...	0.28	Orthogroups_2024-Update
evm.model.tig00001339.27	No alias	(at5g60670 : 218.0) Ribosomal protein L11 family...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_L11_N	15	69
IPR020783	Ribosomal_L11_C	75	144

External Links

No external refs found!

Seita.7G078800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation