At4g31700

Description : 40S ribosomal protein S6-1 [Source:UniProtKB/Swiss-Prot;Acc:O48549]

Gene families : OG_42_0001972 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At4g31700
Cluster	HCCA clusters: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
172795	No alias	Ribosomal protein S6e	0.04	Orthogroups_2024-Update
A4A49_38773	No alias	40s ribosomal protein s6-2	0.03	Orthogroups_2024-Update
A4A49_58422	No alias	40s ribosomal protein s6-1	0.05	Orthogroups_2024-Update
A4A49_61057	No alias	40s ribosomal protein s6-1	0.03	Orthogroups_2024-Update
Bradi1g21320	No alias	Ribosomal protein S6e	0.05	Orthogroups_2024-Update
Bradi1g60730	No alias	Ribosomal protein S6e	0.05	Orthogroups_2024-Update
Brara.A00605.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.C00414.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.J02318.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Glyma.07G198600	No alias	Ribosomal protein S6e	0.04	Orthogroups_2024-Update
Glyma.08G343800	No alias	Ribosomal protein S6e	0.03	Orthogroups_2024-Update
Glyma.13G177800	No alias	Ribosomal protein S6e	0.05	Orthogroups_2024-Update
Glyma.13G237800	No alias	Ribosomal protein S6e	0.03	Orthogroups_2024-Update
Glyma.15G075600	No alias	Ribosomal protein S6e	0.08	Orthogroups_2024-Update
HORVU2Hr1G010870.8	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU2Hr1G010890.2	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Kfl00053_0450	kfl00053_0450_v1.1	(q9m3v8\|rs6_aspof : 374.0) 40S ribosomal protein S6 -...	0.03	Orthogroups_2024-Update
LOC_Os03g27260	No alias	40S ribosomal protein S6, putative, expressed	0.03	Orthogroups_2024-Update
Pp1s253_7V6	No alias	40S ribosomal protein S6 [Asparagus officinalis]	0.03	Orthogroups_2024-Update
Seita.2G394600.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Seita.3G362000.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G379500.3	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.008G098800.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc08g006040	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CI93_SOLLC)	0.04	Orthogroups_2024-Update
Solyc08g074240	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CME5_SOLLC)	0.05	Orthogroups_2024-Update
Solyc12g096300	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4DHA3_SOLLC)	0.05	Orthogroups_2024-Update
Sopen08g002010	No alias	Ribosomal protein S6e	0.05	Orthogroups_2024-Update
Sopen08g022890	No alias	Ribosomal protein S6e	0.04	Orthogroups_2024-Update
Sopen12g032160	No alias	Ribosomal protein S6e	0.06	Orthogroups_2024-Update
evm.model.contig_441.13	No alias	(q9m3v8\|rs6_aspof : 246.0) 40S ribosomal protein S6 -...	0.04	Orthogroups_2024-Update
evm.model.tig00000704.73	No alias	(at5g10360 : 214.0) RPS6A and RPS6B are fully redundant...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Predicted GO
MF	GO:0003896	DNA primase activity	IEP	Predicted GO
MF	GO:0003909	DNA ligase activity	IEP	Predicted GO
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016289	CoA hydrolase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	128

External Links

No external refs found!

At4g31700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation