Seita.7G108100.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.7G108100.1
Cluster	HCAA Clusters: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
At1g19220	No alias	Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]	0.03	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.03	Orthogroups_2024-Update
Bradi1g32547	No alias	auxin response factor 6	0.04	Orthogroups_2024-Update
Bradi2g08120	No alias	auxin response factor 11	0.03	Orthogroups_2024-Update
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Bradi3g28950	No alias	auxin response factor 16	0.04	Orthogroups_2024-Update
Bradi3g49320	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Bradi4g17410	No alias	auxin response factor 2	0.04	Orthogroups_2024-Update
Bradi5g25767	No alias	auxin response factor 6	0.08	Orthogroups_2024-Update
GRMZM2G056120	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
GRMZM2G153233	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
GRMZM2G160005	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.05	Orthogroups_2024-Update
Glyma.07G202200	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.08G008100	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.11G204200	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.13G325200	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
Glyma.18G184500	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
HORVU2Hr1G125740.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU3Hr1G072340.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os02g41800	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.05	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.02	Orthogroups_2024-Update
PSME_00050564-RA	No alias	(at2g28350 : 502.0) Involved in root cap cell...	0.03	Orthogroups_2024-Update
Potri.008G039000	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Seita.3G020000.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Seita.7G169600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Sobic.010G236300.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc01g103050	No alias	Auxin Response Factor 1	0.02	Orthogroups_2024-Update
Solyc07g043620	No alias	Auxin Response Factor 6B	0.02	Orthogroups_2024-Update
Sopen04g034850	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Predicted GO
MF	GO:0005049	nuclear export signal receptor activity	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006007	glucose catabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Predicted GO
MF	GO:0015020	glucuronosyltransferase activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0019320	hexose catabolic process	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0046365	monosaccharide catabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140104	molecular carrier activity	IEP	Predicted GO
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	536	585
IPR033389	AUX/IAA_dom	597	638
IPR010525	Auxin_resp	254	339
IPR003340	B3_DNA-bd	128	228

External Links

No external refs found!

Seita.7G108100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation