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  5. Seita.7G165800.1

Seita.7G165800.1


Description : nucleocytoplasmic import karyopherin *(IMB1)


Gene families : OG_42_0001757 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001757_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G165800.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
124593 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g00730 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Cre01.g034000 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G060180.2 No alias nucleocytoplasmic import karyopherin *(IMB1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G021530.2 No alias nucleocytoplasmic import karyopherin *(IMB1) 0.04 Orthogroups_2024-Update
MA_34778g0010 No alias (at5g53480 : 1120.0) ARM repeat superfamily protein;... 0.03 Orthogroups_2024-Update
Sobic.009G102900.1 No alias nucleocytoplasmic import karyopherin *(IMB1) 0.06 Orthogroups_2024-Update
Solyc09g005010 No alias Importin subunit beta-1 (AHRD V3.3 *** W9RG70_9ROSA) 0.05 Orthogroups_2024-Update
evm.model.contig_490.5 No alias (at3g08943 : 518.0) ARM repeat superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA 16Dec
MF GO:0031267 small GTPase binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription factor complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006360 transcription by RNA polymerase I IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0017182 peptidyl-diphthamide metabolic process IEP Predicted GO
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP Predicted GO
BP GO:0018202 peptidyl-histidine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:1900247 regulation of cytoplasmic translational elongation IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
BP GO:2000765 regulation of cytoplasmic translation IEP Predicted GO
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 21 101
No external refs found!