1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.7G177500.1

Seita.7G177500.1


Description : delta-4 sphingolipid desaturase


Gene families : OG_42_0007763 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007763_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G177500.1
Cluster HCAA Clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g42660 No alias sphingolipid delta desaturase, putative, expressed 0.03 Orthogroups_2024-Update
Sobic.006G157100.1 No alias delta-4 sphingolipid desaturase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013866 Sphingolipid_d4-desaturase_N 13 48
IPR005804 FA_desaturase_dom 71 295
No external refs found!