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  5. Seita.7G179500.1

Seita.7G179500.1


Description : LIM-type transcription factor


Gene families : OG_42_0000555 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G179500.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
143123 No alias GATA type zinc finger transcription factor family protein 0.02 Orthogroups_2024-Update
A4A49_29105 No alias lim domain-containing protein wlim1 0.03 Orthogroups_2024-Update
PSME_00005847-RA No alias (at1g01780 : 120.0) GATA type zinc finger transcription... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 106 160
No external refs found!