1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.7G218600.1

Seita.7G218600.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G218600.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
A4A49_10724 No alias ring-h2 finger protein atl33 0.02 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
At1g20823 No alias RING-H2 finger protein ATL80... 0.02 Orthogroups_2024-Update
At1g53820 No alias RING-H2 finger protein ATL60... 0.03 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.03 Orthogroups_2024-Update
At2g42360 No alias E3 ubiquitin-protein ligase ATL41... 0.02 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.02 Orthogroups_2024-Update
Bradi1g45727 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g52160 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g09830 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01805.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C03092.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.F02863.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G01336.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.G03117.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G004480 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G075782 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G447566 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G017300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G222300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G082550 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G058000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G056000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G112200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.05 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G051480.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU6Hr1G051510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU6Hr1G091610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g64620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g33720 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436650g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_1252g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_17362g0010 No alias (at5g06490 : 90.5) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_44828g0020 No alias (at3g62690 : 89.0) Encodes a RING-H2 zinc finger protein... 0.03 Orthogroups_2024-Update
MA_479316g0010 No alias (at3g16720 : 91.3) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_5319g0010 No alias (at1g49230 : 120.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_611616g0010 No alias (at1g49230 : 125.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_69343g0010 No alias (at1g49230 : 137.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00022170-RA No alias (at1g53820 : 134.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
PSME_00057213-RA No alias (at1g72310 : 115.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
Potri.002G006400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G165200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G019000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G049300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s71_157V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.04 Orthogroups_2024-Update
Sobic.001G063900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.003G299800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.008G175600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g067700 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc03g032060 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.05 Orthogroups_2024-Update
Solyc04g082690 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.03 Orthogroups_2024-Update
Solyc11g007530 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DVK5_THECC) 0.04 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen09g030100 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g002340 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_2025.32 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_2102.17 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 163 206
No external refs found!