1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.7G244600.1

Seita.7G244600.1


Description : SSU processome assembly factor *(SWA1)


Gene families : OG_42_0006079 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006079_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G244600.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AC212570.3_FG006 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
At2g47990 No alias Protein SLOW WALKER 1 [Source:UniProtKB/Swiss-Prot;Acc:O82266] 0.07 Orthogroups_2024-Update
Bradi1g53790 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Brara.C00238.1 No alias SSU processome assembly factor *(SWA1) 0.04 Orthogroups_2024-Update
Cre03.g196850 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Glyma.10G022600 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G117550.1 No alias SSU processome assembly factor *(SWA1) 0.05 Orthogroups_2024-Update
LOC_Os07g12320 No alias WD domain, G-beta repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.014G135600 No alias transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
Pp1s62_85V6 No alias No description available 0.05 Orthogroups_2024-Update
Sobic.007G137350.1 No alias SSU processome assembly factor *(SWA1) 0.3 Orthogroups_2024-Update
Solyc05g010480 No alias No description available 0.08 Orthogroups_2024-Update
Sopen05g006280 No alias UTP15 C terminal 0.13 Orthogroups_2024-Update
evm.model.contig_3524.8 No alias (at2g47990 : 220.0) Encodes a transducin family... 0.03 Orthogroups_2024-Update
evm.model.tig00020927.23 No alias (at2g47990 : 191.0) Encodes a transducin family... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005730 nucleolus IEA 16Dec
BP GO:0006364 rRNA processing IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 228 257
IPR001680 WD40_repeat 184 215
IPR018983 U3_snoRNA-assocProt_15_C 391 532
No external refs found!