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  5. Seita.7G266900.1

Seita.7G266900.1


Description : E3 ubiquitin ligase *(RFI2)


Gene families : OG_42_0001647 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001647_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G266900.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Bradi2g35180 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.E00019.1 No alias E3 ubiquitin ligase *(RFI2) 0.02 Orthogroups_2024-Update
GRMZM2G011473 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G153250 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G232800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G022130.3 No alias E3 ubiquitin ligase *(RFI2) 0.03 Orthogroups_2024-Update
Sobic.009G049300.1 No alias E3 ubiquitin ligase *(RFI2) 0.05 Orthogroups_2024-Update
Solyc01g099790 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G05545.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 34 81
No external refs found!