Seita.7G290900.1

Description : component *(uL3) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.7G290900.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
270706	No alias	ribosomal protein 1	0.18	Orthogroups_2024-Update
At1g43170	No alias	60S ribosomal protein L3-1...	0.02	Orthogroups_2024-Update
Bradi4g24610	No alias	ribosomal protein 1	0.17	Orthogroups_2024-Update
Bradi4g41680	No alias	ribosomal protein 1	0.16	Orthogroups_2024-Update
Brara.B02465.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Brara.I01735.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
GRMZM2G109677	No alias	ribosomal protein 1	0.03	Orthogroups_2024-Update
Glyma.20G168100	No alias	ribosomal protein 1	0.11	Orthogroups_2024-Update
HORVU4Hr1G019980.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Kfl01033_0020	kfl01033_0020_v1.1	(at1g61580 : 584.0) R-protein L3 B (RPL3B); FUNCTIONS...	0.09	Orthogroups_2024-Update
LOC_Os11g06750	No alias	ribosomal protein L3, putative, expressed	0.04	Orthogroups_2024-Update
MA_10432758g0010	No alias	(p35684\|rl3_orysj : 667.0) 60S ribosomal protein L3...	0.09	Orthogroups_2024-Update
MA_124178g0010	No alias	(p35684\|rl3_orysj : 658.0) 60S ribosomal protein L3...	0.07	Orthogroups_2024-Update
Mp1g18990.1	No alias	component RPL3 of LSU proteome component	0.13	Orthogroups_2024-Update
PSME_00045974-RA	No alias	(p35684\|rl3_orysj : 681.0) 60S ribosomal protein L3...	0.02	Orthogroups_2024-Update
PSME_00049106-RA	No alias	(p35684\|rl3_orysj : 665.0) 60S ribosomal protein L3...	0.05	Orthogroups_2024-Update
Potri.002G066200	No alias	ribosomal protein 1	0.13	Orthogroups_2024-Update
Potri.005G194500	No alias	ribosomal protein 1	0.08	Orthogroups_2024-Update
Pp1s330_36V6	No alias	ribosomal protein l3	0.21	Orthogroups_2024-Update
Sobic.005G050500.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Sobic.006G216600.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Solyc01g104590	No alias	ribosomal protein L3	0.23	Orthogroups_2024-Update
Sopen01g045870	No alias	Ribosomal protein L3	0.02	Orthogroups_2024-Update
Sopen01g047100	No alias	Ribosomal protein L3	0.25	Orthogroups_2024-Update
evm.model.contig_2059.33	No alias	(at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS...	0.15	Orthogroups_2024-Update
evm.model.tig00000025.50	No alias	(p35684\|rl3_orysj : 551.0) 60S ribosomal protein L3...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	1	370

External Links

No external refs found!

Seita.7G290900.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation