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  5. Seita.8G000600.1

Seita.8G000600.1


Description : nucleoporin of nuclear pore complex *(NUP98)


Gene families : OG_42_0001108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G000600.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
A4A49_04265 No alias nuclear pore complex protein nup98a 0.04 Orthogroups_2024-Update
At1g59660 No alias Nuclear pore complex protein NUP98B... 0.04 Orthogroups_2024-Update
At1g80680 No alias Nuclear pore complex protein NUP96... 0.04 Orthogroups_2024-Update
HORVU4Hr1G024430.8 No alias nucleoporin of nuclear pore complex *(NUP98) 0.05 Orthogroups_2024-Update
PSME_00023234-RA No alias (at1g10390 : 778.0) Nucleoporin autopeptidase; FUNCTIONS... 0.03 Orthogroups_2024-Update
Sopen04g002340 No alias Nucleoporin autopeptidase 0.02 Orthogroups_2024-Update
evm.model.tig00000663.22 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA 16Dec
BP GO:0006913 nucleocytoplasmic transport IEA 16Dec
MF GO:0017056 structural constituent of nuclear pore IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007230 Peptidase_S59 772 918
No external refs found!