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  5. Seita.8G001900.1

Seita.8G001900.1


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA)


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G001900.1
Cluster HCAA Clusters: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
At2g25370 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
At3g45510 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Bradi4g30410 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os11g01240 No alias IBR domain containing protein, expressed 0.02 Orthogroups_2024-Update
Pp1s64_60V6 No alias zinc finger 0.03 Orthogroups_2024-Update
Solyc03g115920 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G14250.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 76 132
No external refs found!