1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.8G012900.1

Seita.8G012900.1


Description : Unknown function


Gene families : OG_42_0008145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G012900.1
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
79843 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g21093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Seita.7G302100.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Sobic.001G267500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 424 472
IPR002885 Pentatricopeptide_repeat 562 611
IPR002885 Pentatricopeptide_repeat 323 366
IPR002885 Pentatricopeptide_repeat 632 681
IPR002885 Pentatricopeptide_repeat 252 301
IPR002885 Pentatricopeptide_repeat 188 213
IPR002885 Pentatricopeptide_repeat 496 525
IPR002885 Pentatricopeptide_repeat 220 247
IPR002885 Pentatricopeptide_repeat 531 560
IPR002885 Pentatricopeptide_repeat 698 716
No external refs found!