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  5. Seita.8G028000.1

Seita.8G028000.1


Description : peroxisomal long-chain acyl-CoA synthetase & EC_6.2 ligase forming carbon-sulfur bond


Gene families : OG_42_0000553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000553_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G028000.1
Cluster HCAA Clusters: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
Bradi2g38490 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G024350.1 No alias EC_6.2 ligase forming carbon-sulfur bond 0.03 Orthogroups_2024-Update
Solyc09g075790 No alias Long-Chain Acyl-CoA Synthetase (AHRD V3.3 *** A0A0R5QM74_SALMI) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 568 611
IPR000873 AMP-dep_Synth/Lig 117 558
No external refs found!