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  5. Seita.8G053900.1

Seita.8G053900.1


Description : Unknown function


Gene families : OG_42_0008180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008180_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G053900.1
Cluster HCAA Clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Bradi4g36740 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Brara.B02920.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_108808g0010 No alias (at5g46680 : 339.0) Pentatricopeptide repeat (PPR-like)... 0.04 Orthogroups_2024-Update
PSME_00024262-RA No alias (at5g46680 : 331.0) Pentatricopeptide repeat (PPR-like)... 0.06 Orthogroups_2024-Update
Solyc07g055220 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 233
IPR002885 Pentatricopeptide_repeat 361 405
IPR002885 Pentatricopeptide_repeat 115 163
IPR002885 Pentatricopeptide_repeat 291 339
IPR002885 Pentatricopeptide_repeat 45 93
IPR002885 Pentatricopeptide_repeat 260 287
No external refs found!