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  5. Solyc03g112590

Solyc03g112590


Description : cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g112590
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Brara.E03061.1 No alias platform ATPase CDC48 0.03 Orthogroups_2024-Update
Glyma.12G079202 No alias ATPase, AAA-type, CDC48 protein 0.04 Orthogroups_2024-Update
PSME_00021909-RA No alias (p54774|cdc48_soybn : 319.0) Cell division cycle protein... 0.04 Orthogroups_2024-Update
Potri.017G108200 No alias ATPase, AAA-type, CDC48 protein 0.03 Orthogroups_2024-Update
Solyc10g084050 No alias cell division cycle 48 (AHRD V3.3 *** AT3G09840.1) 0.03 Orthogroups_2024-Update
Sopen09g002870 No alias ATPase family associated with various cellular activities (AAA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 31 112
IPR004201 Cdc48_dom2 167 216
IPR003959 ATPase_AAA_core 539 672
IPR003959 ATPase_AAA_core 266 395
No external refs found!