Seita.8G135700.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.8G135700.1
Cluster	HCAA Clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18150	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
A4A49_26861	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
A4A49_30370	No alias	auxin response factor 11	0.03	Orthogroups_2024-Update
At1g34310	No alias	Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]	0.02	Orthogroups_2024-Update
At2g33860	No alias	Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]	0.03	Orthogroups_2024-Update
Bradi1g34340	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Brara.G02126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I04264.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G023813	No alias	auxin response factor 17	0.03	Orthogroups_2024-Update
GRMZM2G056120	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
GRMZM2G116557	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
GRMZM2G390641	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.02G239600	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.11G204200	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.05	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.19G181900	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.19G206100	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
HORVU3Hr1G072340.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G009650.20	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
HORVU7Hr1G106280.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os01g70270	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g57610	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g48870	No alias	auxin response factor 15, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g48950	No alias	auxin response factor 19, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
MA_40335g0010	No alias	(at5g62000 : 752.0) Encodes an auxin response factor....	0.03	Orthogroups_2024-Update
Potri.001G066200	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Potri.011G091900	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.03	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.1G195500.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Seita.7G108100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.7G169600.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Solyc11g013470	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen03g005820	No alias	Auxin response factor	0.04	Orthogroups_2024-Update
Sopen07g021880	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
MF	GO:0003993	acid phosphatase activity	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	238	320
IPR003340	B3_DNA-bd	112	213
IPR033389	AUX/IAA_dom	728	771

External Links

No external refs found!

Seita.8G135700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation