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  5. Seita.8G140600.1

Seita.8G140600.1


Description : regulatory protein (RBR) of cell cycle interphase


Gene families : OG_42_0003292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.8G140600.1
Cluster HCAA Clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G153150 No alias retinoblastoma-related 1 0.03 Orthogroups_2024-Update
Glyma.13G192400 No alias retinoblastoma-related 1 0.02 Orthogroups_2024-Update
Sobic.009G010600.3 No alias regulatory protein (RBR) of cell cycle interphase 0.04 Orthogroups_2024-Update
Solyc09g091280 No alias Retinoblastoma-related protein 1 (AHRD V3.3 *** H9E8V1_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
BP GO:0051726 regulation of cell cycle IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002719 RB_B 708 832
IPR024599 RB_N 76 209
IPR002720 RB_A 386 587
No external refs found!