Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.9G015400.1 | |
Cluster | HCAA Clusters: Cluster_34 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
105356 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
173093 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
AC203841.3_FG002 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At1g18485 | No alias | Pentatricopeptide repeat-containing protein At1g18485... | 0.03 | Orthogroups_2024-Update | |
At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
Bradi2g06450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.08 | Orthogroups_2024-Update | |
Bradi2g27440 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g32290 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g62320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A00474.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.A03196.1 | No alias | RNA editing factor *(CREF3) | 0.04 | Orthogroups_2024-Update | |
Brara.B03211.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.E03135.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.I04209.1 | No alias | RNA editing factor *(MEF100) | 0.02 | Orthogroups_2024-Update | |
Brara.K00505.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
GRMZM2G031588 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G161368 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G171994 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G440349 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
Glyma.03G108500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.03G189000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.05G008800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G125500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.05G244300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.06G311600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G159200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G168800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G286300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.12G239300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.13G240000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.18G085900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G090780.5 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G026070.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G026110.4 | No alias | RNA editing factor *(DOT4) | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G095490.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G111860.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
LOC_Os04g14450 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os11g45410 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
MA_86628g0010 | No alias | (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
Potri.003G191000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.004G205900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Potri.007G050200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.010G086200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.013G044700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.015G018700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Seita.7G277600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.001G016100.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
Sobic.001G025800.1 | No alias | RNA editing factor *(CRR22) | 0.06 | Orthogroups_2024-Update | |
Sobic.001G033600.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.06 | Orthogroups_2024-Update | |
Sobic.002G048200.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sobic.002G065200.1 | No alias | RNA editing factor *(CRR28) | 0.06 | Orthogroups_2024-Update | |
Sobic.003G223000.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Sobic.004G246800.1 | No alias | Unknown function | 0.08 | Orthogroups_2024-Update | |
Sobic.005G081000.3 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sobic.006G122100.2 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Sobic.007G137800.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.009G079400.1 | No alias | RNA editing factor *(ECD1) | 0.04 | Orthogroups_2024-Update | |
Sobic.009G250700.1 | No alias | Unknown function | 0.08 | Orthogroups_2024-Update | |
Sobic.010G153600.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Solyc04g063270 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc05g006800 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Sopen02g024180 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen11g001910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Predicted GO |
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | Predicted GO |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
MF | GO:0004784 | superoxide dismutase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006415 | translational termination | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006801 | superoxide metabolic process | IEP | Predicted GO |
BP | GO:0006826 | iron ion transport | IEP | Predicted GO |
MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
BP | GO:0034755 | iron ion transmembrane transport | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 7 | 37 |
IPR002885 | Pentatricopeptide_repeat | 376 | 398 |
IPR002885 | Pentatricopeptide_repeat | 476 | 500 |
IPR002885 | Pentatricopeptide_repeat | 80 | 104 |
IPR002885 | Pentatricopeptide_repeat | 105 | 152 |
IPR002885 | Pentatricopeptide_repeat | 402 | 448 |
IPR002885 | Pentatricopeptide_repeat | 300 | 348 |
IPR002885 | Pentatricopeptide_repeat | 202 | 249 |
No external refs found! |