1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G032400.1

Seita.9G032400.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G032400.1
Cluster HCAA Clusters: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
At1g12560 No alias EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749] 0.05 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.04 Orthogroups_2024-Update
HORVU6Hr1G075970.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Kfl00386_0010 kfl00386_0010_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00857_0040 kfl00857_0040_v1.1 (at1g12560 : 155.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_75790g0010 No alias (at5g05290 : 306.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00014026-RA No alias (at1g69530 : 221.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.03 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00055878-RA No alias (at5g02260 : 159.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.013G060800 No alias expansin A15 0.02 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
Pp1s196_30V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Sopen03g034340 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 70 158
IPR007117 Expansin_CBD 169 246
No external refs found!