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  5. Seita.9G044000.1

Seita.9G044000.1


Description : polygalacturonase *(QRT2) & EC_3.2 glycosylase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G044000.1
Cluster HCAA Clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
At4g35670 No alias Pectin lyase-like superfamily protein... 0.04 Orthogroups_2024-Update
Bradi1g04610 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G224800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
PSME_00001783-RA No alias (at1g23460 : 412.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
PSME_00006814-RA No alias (at1g80170 : 223.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Seita.2G346300.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc12g009420 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 173 504
No external refs found!