1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G059600.1

Seita.9G059600.1


Description : methylation reader *(ECT)


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G059600.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At1g09810 No alias Evolutionarily conserved C-terminal region 11... 0.03 Orthogroups_2024-Update
At1g55500 No alias evolutionarily conserved C-terminal region 4... 0.03 Orthogroups_2024-Update
Bradi4g02150 No alias evolutionarily conserved C-terminal region 2 0.03 Orthogroups_2024-Update
Brara.A03258.1 No alias methylation reader *(ECT) 0.07 Orthogroups_2024-Update
Brara.B02570.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
GRMZM2G340130 No alias evolutionarily conserved C-terminal region 2 0.02 Orthogroups_2024-Update
Glyma.15G136400 No alias evolutionarily conserved C-terminal region 7 0.03 Orthogroups_2024-Update
Potri.004G223800 No alias evolutionarily conserved C-terminal region 11 0.05 Orthogroups_2024-Update
Sobic.001G060500.1 No alias methylation reader *(ECT) 0.06 Orthogroups_2024-Update
Sobic.002G047000.2 No alias methylation reader *(ECT) 0.1 Orthogroups_2024-Update
Sopen05g024050 No alias YT521-B-like domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 375 513
No external refs found!