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  5. Seita.9G060800.1

Seita.9G060800.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G060800.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
171231 No alias O-Glycosyl hydrolases family 17 protein 0.03 Orthogroups_2024-Update
At5g20870 No alias O-Glycosyl hydrolases family 17 protein... 0.02 Orthogroups_2024-Update
Brara.J01741.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Potri.006G080600 No alias O-Glycosyl hydrolases family 17 protein 0.03 Orthogroups_2024-Update
Potri.006G280400 No alias O-Glycosyl hydrolases family 17 protein 0.04 Orthogroups_2024-Update
Potri.018G000900 No alias O-Glycosyl hydrolases family 17 protein 0.03 Orthogroups_2024-Update
Pp1s197_52V6 No alias glucan endo- -beta-glucosidase 0.02 Orthogroups_2024-Update
Sopen07g006550 No alias Glycosyl hydrolases family 17 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000490 Glyco_hydro_17 32 352
IPR012946 X8 374 443
No external refs found!