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  5. Seita.9G063000.1

Seita.9G063000.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G063000.1
Cluster HCAA Clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Bradi1g32080 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Glyma.06G310600 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G289100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G173800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G021450.9 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079910.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.3G171500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Sopen06g021450 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen06g021460 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen06g021470 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_606.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000076.143 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 126 168
No external refs found!