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  5. At4g36860

At4g36860


Description : LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]


Gene families : OG_42_0000650 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000650_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g36860
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14360 No alias LIM domain-containing protein 0.03 Orthogroups_2024-Update
Brara.B02842.1 No alias ubiquitin-dependent protease *(DA1) 0.03 Orthogroups_2024-Update
LOC_Os06g08400 No alias LIM domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s115_135V6 No alias zinc ion binding 0.02 Orthogroups_2024-Update
Pp1s371_43V6 No alias zinc ion binding 0.03 Orthogroups_2024-Update
Pp1s38_127V6 No alias zinc ion binding 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004371 glycerone kinase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 190 245
IPR022087 DA1-like 339 549
No external refs found!