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  5. Seita.9G082000.1

Seita.9G082000.1


Description : Unknown function


Gene families : OG_42_0000934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G082000.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bradi2g13480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G264500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G125900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G079050.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.010G114700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G081300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
MF GO:0019781 NEDD8 activating enzyme activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 237 268
IPR002885 Pentatricopeptide_repeat 171 216
IPR002885 Pentatricopeptide_repeat 310 357
IPR002885 Pentatricopeptide_repeat 379 428
IPR002885 Pentatricopeptide_repeat 140 169
IPR002885 Pentatricopeptide_repeat 279 308
No external refs found!