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  5. Seita.9G102800.1

Seita.9G102800.1


Description : SSU processome assembly factor *(UTP4/PCN)


Gene families : OG_42_0004547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G102800.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
A4A49_16368 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Bradi1g09530 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Brara.C02553.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.05 Orthogroups_2024-Update
Brara.H02048.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.03 Orthogroups_2024-Update
Brara.I03013.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.05 Orthogroups_2024-Update
Cre13.g606850 No alias Transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Glyma.14G089042 No alias Transducin family protein / WD-40 repeat family protein 0.08 Orthogroups_2024-Update
Glyma.17G233900 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Kfl00551_0060 kfl00551_0060_v1.... (at4g07410 : 324.0) Transducin family protein / WD-40... 0.02 Orthogroups_2024-Update
Potri.002G117500 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Pp1s71_289V6 No alias F28D6.14; transducin family protein / WD-40 repeat... 0.04 Orthogroups_2024-Update
Sobic.001G099900.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.17 Orthogroups_2024-Update
Solyc04g077680 No alias Transducin family protein / WD-40 repeat family protein... 0.11 Orthogroups_2024-Update
Sopen04g031320 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
evm.model.tig00000852.39 No alias (at4g07410 : 188.0) Transducin family protein / WD-40... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 216 239
No external refs found!