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  5. Seita.9G121200.1

Seita.9G121200.1


Description : RNA editing factor *(OZ)


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G121200.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
426987 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
438605 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
At1g48570 No alias T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67] 0.03 Orthogroups_2024-Update
Bradi1g11210 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.F00420.1 No alias RNA editing factor *(OZ) 0.05 Orthogroups_2024-Update
Brara.G02989.1 No alias RNA editing factor *(OZ) 0.05 Orthogroups_2024-Update
Brara.I01697.1 No alias RNA editing factor *(OZ) 0.02 Orthogroups_2024-Update
GRMZM2G080139 No alias zinc finger (Ran-binding) family protein 0.04 Orthogroups_2024-Update
GRMZM2G177885 No alias zinc finger (Ran-binding) family protein 0.05 Orthogroups_2024-Update
Glyma.02G084500 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G102100 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
MA_10426200g0010 No alias (at1g55040 : 288.0) zinc finger (Ran-binding) family... 0.03 Orthogroups_2024-Update
Pp1s65_73V6 No alias zinc finger (ran-binding) family protein 0.05 Orthogroups_2024-Update
Sobic.001G116800.1 No alias RNA editing factor *(OZ) 0.05 Orthogroups_2024-Update
Sobic.001G119600.1 No alias RNA editing factor *(OZ) 0.13 Orthogroups_2024-Update
Sobic.002G112600.1 No alias RNA editing factor *(OZ) 0.07 Orthogroups_2024-Update
Solyc01g099230 No alias Zinc finger family protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc03g118680 No alias Zinc finger protein (AHRD V3.3 *** W9RJ16_9ROSA) 0.02 Orthogroups_2024-Update
Solyc08g014510 No alias Zinc finger protein (AHRD V3.3 *** W9RXF5_9ROSA) 0.03 Orthogroups_2024-Update
Sopen03g037640 No alias Zn-finger in Ran binding protein and others 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 314 340
IPR001876 Znf_RanBP2 351 379
No external refs found!