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  5. Seita.9G124400.1

Seita.9G124400.1


Description : component *(uS13c) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0004280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004280_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G124400.1
Cluster HCAA Clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
A4A49_22126 No alias 30s ribosomal protein s13, chloroplastic 0.09 Orthogroups_2024-Update
Bradi1g10990 No alias Ribosomal protein S13/S18 family 0.07 Orthogroups_2024-Update
Brara.C00617.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Brara.J02025.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Cre12.g493950 No alias Ribosomal protein S13/S18 family 0.09 Orthogroups_2024-Update
GRMZM2G153476 No alias Ribosomal protein S13/S18 family 0.09 Orthogroups_2024-Update
Glyma.04G253300 No alias Ribosomal protein S13/S18 family 0.05 Orthogroups_2024-Update
Kfl00859_0050 kfl00859_0050_v1.1 (at5g14320 : 143.0) Ribosomal protein S13/S18 family;... 0.08 Orthogroups_2024-Update
LOC_Os03g49710 No alias ribosomal protein S13p/S18e, putative, expressed 0.03 Orthogroups_2024-Update
MA_10431241g0010 No alias (at5g14320 : 217.0) Ribosomal protein S13/S18 family;... 0.05 Orthogroups_2024-Update
Potri.002G088300 No alias Ribosomal protein S13/S18 family 0.09 Orthogroups_2024-Update
Potri.005G172600 No alias Ribosomal protein S13/S18 family 0.06 Orthogroups_2024-Update
Pp1s258_19V6 No alias 30s ribosomal protein s13 0.08 Orthogroups_2024-Update
Sobic.001G122400.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 48 152
No external refs found!