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  5. Seita.9G137300.1

Seita.9G137300.1


Description : MRM3-type rRNA methyltransferase


Gene families : OG_42_0007350 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007350_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G137300.1
Cluster HCAA Clusters: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
77463 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.02 Orthogroups_2024-Update
At4g38020 No alias At4g38020 [Source:UniProtKB/TrEMBL;Acc:Q8GYL4] 0.02 Orthogroups_2024-Update
Bradi1g12250 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.04 Orthogroups_2024-Update
Cre17.g744947 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.02 Orthogroups_2024-Update
Kfl00324_0140 kfl00324_0140_v1.1 (at4g38020 : 243.0) tRNA/rRNA methyltransferase (SpoU)... 0.01 Orthogroups_2024-Update
Potri.005G147600 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.03 Orthogroups_2024-Update
Solyc11g010900 No alias tRNA/rRNA methyltransferase family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
MF GO:0008173 RNA methyltransferase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001537 SpoU_MeTrfase 182 330
No external refs found!