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  5. Seita.9G184000.1

Seita.9G184000.1


Description : Unknown function


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G184000.1
Cluster HCAA Clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
A4A49_18573 No alias 4-coumarate--coa ligase-like 9 0.03 Orthogroups_2024-Update
A4A49_31911 No alias 4-coumarate--coa ligase-like 6 0.02 Orthogroups_2024-Update
At1g20490 No alias AMP-dependent synthetase and ligase family protein... 0.04 Orthogroups_2024-Update
Bradi3g37300 No alias 4-coumarate:CoA ligase 2 0.06 Orthogroups_2024-Update
Brara.A01009.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02090.1 No alias p-coumarate 0.01 Orthogroups_2024-Update
GRMZM2G055320 No alias 4-coumarate:CoA ligase 2 0.02 Orthogroups_2024-Update
GRMZM2G122787 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
LOC_Os10g42800 No alias AMP-binding enzyme, putative, expressed 0.02 Orthogroups_2024-Update
MA_103893g0010 No alias (at1g20510 : 417.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_10922g0010 No alias (at1g20510 : 573.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_20580g0050 No alias (at1g20510 : 588.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
MA_5g0040 No alias (at4g05160 : 362.0) Encodes a peroxisomal protein... 0.04 Orthogroups_2024-Update
PSME_00006384-RA No alias (o24146|4cl2_tobac : 768.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00006443-RA No alias (at1g20510 : 556.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
Pp1s12_59V6 No alias amp dependent 0.01 Orthogroups_2024-Update
Pp1s20_346V6 No alias 4-coumarate: ligase 0.02 Orthogroups_2024-Update
Pp1s71_170V6 No alias 4-coumarate: ligase 0.01 Orthogroups_2024-Update
Seita.1G065800.1 No alias p-coumarate 0.03 Orthogroups_2024-Update
Solyc12g094520 No alias 4-coumarate--CoA ligase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen11g027760 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 49 449
No external refs found!