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  5. Seita.9G201000.1

Seita.9G201000.1


Description : LIM-type transcription factor


Gene families : OG_42_0000555 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G201000.1
Cluster HCAA Clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
143123 No alias GATA type zinc finger transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.I04216.1 No alias LIM-type transcription factor 0.02 Orthogroups_2024-Update
Potri.001G292900 No alias GATA type zinc finger transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.014G080900 No alias GATA type zinc finger transcription factor family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 104 158
No external refs found!