Seita.9G219800.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.9G219800.1
Cluster	HCAA Clusters: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
At4g30080	No alias	Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]	0.03	Orthogroups_2024-Update
Brara.F01415.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.05G200800	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.08G008100	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.11G145500	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Glyma.16G000300	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
LOC_Os04g57610	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.02	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Pp1s119_32V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Solyc03g118290	No alias	auxin response factor 2A	0.02	Orthogroups_2024-Update
Sopen02g011920	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen03g032460	No alias	AUX/IAA family	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000814	ESCRT II complex	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005985	sucrose metabolic process	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
MF	GO:0016157	sucrose synthase activity	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
CC	GO:0030008	TRAPP complex	IEP	Predicted GO
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predicted GO
CC	GO:0036452	ESCRT complex	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
CC	GO:0044433	cytoplasmic vesicle part	IEP	Predicted GO
CC	GO:0044440	endosomal part	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
BP	GO:0071985	multivesicular body sorting pathway	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	275	358
IPR003340	B3_DNA-bd	119	220

External Links

No external refs found!

Seita.9G219800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation