Seita.9G229600.1

Description : component *(eL21) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002269 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002269_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.9G229600.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
170832	No alias	Translation protein SH3-like family protein	0.14	Orthogroups_2024-Update
A4A49_17708	No alias	60s ribosomal protein l21-2	0.06	Orthogroups_2024-Update
A4A49_24703	No alias	60s ribosomal protein l21-2	0.07	Orthogroups_2024-Update
At1g57660	No alias	60S ribosomal protein L21-2...	0.04	Orthogroups_2024-Update
Bradi1g75620	No alias	Translation protein SH3-like family protein	0.06	Orthogroups_2024-Update
Bradi3g28220	No alias	Translation protein SH3-like family protein	0.14	Orthogroups_2024-Update
Brara.F00615.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.F00624.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.H02804.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.H02810.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Brara.I01623.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.I05254.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.I05263.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Cre06.g278135	No alias	Translation protein SH3-like family protein	0.1	Orthogroups_2024-Update
GRMZM2G026216	No alias	Translation protein SH3-like family protein	0.11	Orthogroups_2024-Update
GRMZM2G149257	No alias	Translation protein SH3-like family protein	0.13	Orthogroups_2024-Update
Glyma.03G207500	No alias	Translation protein SH3-like family protein	0.11	Orthogroups_2024-Update
Glyma.19G205000	No alias	Translation protein SH3-like family protein	0.13	Orthogroups_2024-Update
HORVU1Hr1G038890.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Kfl00008_0470	kfl00008_0470_v1.1	(at1g57860 : 268.0) Translation protein SH3-like family...	0.02	Orthogroups_2024-Update
LOC_Os10g32820	No alias	60S ribosomal protein L21-2, putative, expressed	0.05	Orthogroups_2024-Update
MA_186351g0010	No alias	(at1g57860 : 291.0) Translation protein SH3-like family...	0.04	Orthogroups_2024-Update
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.09	Orthogroups_2024-Update
PSME_00039521-RA	No alias	(at1g57860 : 292.0) Translation protein SH3-like family...	0.07	Orthogroups_2024-Update
Potri.003G159500	No alias	Translation protein SH3-like family protein	0.06	Orthogroups_2024-Update
Potri.006G195400	No alias	Translation protein SH3-like family protein	0.05	Orthogroups_2024-Update
Potri.016G061100	No alias	Translation protein SH3-like family protein	0.04	Orthogroups_2024-Update
Pp1s107_181V6	No alias	60s ribosomal protein l21	0.05	Orthogroups_2024-Update
Pp1s1_780V6	No alias	60s ribosomal protein l21	0.05	Orthogroups_2024-Update
Pp1s298_23V6	No alias	60s ribosomal protein l21	0.06	Orthogroups_2024-Update
Pp1s91_107V6	No alias	60s ribosomal protein l21	0.02	Orthogroups_2024-Update
Seita.9G544700.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Sobic.001G226500.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Sobic.001G508900.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Solyc10g078960	No alias	60S ribosomal protein L21-like protein (AHRD V3.3 ***...	0.1	Orthogroups_2024-Update
Solyc10g080590	No alias	60S ribosomal protein L21-like protein (AHRD V3.3 ***...	0.19	Orthogroups_2024-Update
Sopen10g029590	No alias	Ribosomal protein L21e	0.14	Orthogroups_2024-Update
Sopen10g031130	No alias	Ribosomal protein L21e	0.17	Orthogroups_2024-Update
evm.model.contig_4456.21	No alias	(at1g57860 : 119.0) Translation protein SH3-like family...	0.21	Orthogroups_2024-Update
evm.model.tig00000640.5	No alias	(at1g57860 : 125.0) Translation protein SH3-like family...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003724	RNA helicase activity	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003896	DNA primase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030488	tRNA methylation	IEP	Predicted GO
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Predicted GO
BP	GO:0032259	methylation	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0034708	methyltransferase complex	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043527	tRNA methyltransferase complex	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

Seita.9G229600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation