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  5. Seita.9G230200.1

Seita.9G230200.1


Description : Unknown function


Gene families : OG_42_0000384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000384_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G230200.1
Cluster HCAA Clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G218200 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
LOC_Os03g04890 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_218345g0010 No alias (at2g38970 : 115.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
PSME_00055985-RA No alias (at2g38970 : 512.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
Seita.1G358800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G278500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G226900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G508600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen05g034550 No alias von Willebrand factor type A domain 0.03 Orthogroups_2024-Update
Sopen11g028310 No alias von Willebrand factor type A domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 86 115
IPR032838 Vwaint_dom 594 666
IPR002035 VWF_A 247 429
No external refs found!