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  5. Seita.9G260900.1

Seita.9G260900.1


Description : deadenylase component *(CCR4) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002806 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G260900.1
Cluster HCAA Clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi3g26410 No alias DNAse I-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.D00233.1 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.04 Orthogroups_2024-Update
Glyma.09G105600 No alias DNAse I-like superfamily protein 0.05 Orthogroups_2024-Update
Sobic.001G251100.2 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.05 Orthogroups_2024-Update
Sobic.001G493200.3 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 Orthogroups_2024-Update
evm.model.tig00000342.20 No alias (at3g58560 : 272.0) DNAse I-like superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 258 601
No external refs found!