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  5. Seita.9G273200.1

Seita.9G273200.1


Description : Unknown function


Gene families : OG_42_0006901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006901_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G273200.1
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At2g01390 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.03 Orthogroups_2024-Update
GRMZM2G450537 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
MA_48867g0010 No alias (at2g01390 : 402.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.005G127500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 229 271
IPR002885 Pentatricopeptide_repeat 455 502
IPR002885 Pentatricopeptide_repeat 102 150
IPR002885 Pentatricopeptide_repeat 170 218
No external refs found!