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At4g38780


Description : Pre-mRNA-processing-splicing factor [Source:TAIR;Acc:AT4G38780]


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g38780
Cluster HCCA clusters: Cluster_192


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 2100 2197
IPR012984 PROCT 2211 2328
IPR019581 Prp8_U5-snRNA-bd 1209 1342
IPR019580 Prp8_U6-snRNA-bd 1441 1599
IPR012592 PROCN 394 799
IPR012591 PRO8NT 66 204
IPR021983 PRP8_domainIV 1759 1988
IPR019582 RRM_spliceosomal_PrP8 984 1074
No external refs found!