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  5. Seita.9G300300.1

Seita.9G300300.1


Description : DNA chromomethylase *(CMT)


Gene families : OG_42_0002722 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G300300.1
Cluster HCAA Clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
At1g69770 No alias DNA (cytosine-5)-methyltransferase CMT3... 0.02 Orthogroups_2024-Update
Sobic.006G214000.1 No alias DNA chromomethylase *(CMT) 0.05 Orthogroups_2024-Update
Solyc01g006100 No alias cytosine-5 DNA methyltransferase1L 0.02 Orthogroups_2024-Update
Solyc12g100330 No alias cytosine-5 DNA methyltransferase3L 0.03 Orthogroups_2024-Update
Sopen01g002100 No alias C-5 cytosine-specific DNA methylase 0.04 Orthogroups_2024-Update
Sopen08g001440 No alias C-5 cytosine-specific DNA methylase 0.02 Orthogroups_2024-Update
Sopen12g034960 No alias C-5 cytosine-specific DNA methylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA 16Dec
MF GO:0008168 methyltransferase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
InterPro domains Description Start Stop
IPR001025 BAH_dom 189 312
IPR023780 Chromo_domain 446 499
IPR001525 C5_MeTfrase 508 867
No external refs found!