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  5. Seita.9G306200.1

Seita.9G306200.1


Description : calcium-permeable channel *(OSCA)


Gene families : OG_42_0000192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000192_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G306200.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At4g04340 No alias Protein OSCA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEA1] 0.03 Orthogroups_2024-Update
Bradi4g00860 No alias lipases;hydrolases, acting on ester bonds 0.04 Orthogroups_2024-Update
Brara.A02367.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Glyma.01G010100 No alias early-responsive to dehydration stress protein (ERD4) 0.03 Orthogroups_2024-Update
Glyma.15G091600 No alias Early-responsive to dehydration stress protein (ERD4) 0.02 Orthogroups_2024-Update
Glyma.20G066800 No alias ERD (early-responsive to dehydration stress) family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G063620.3 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Kfl00319_0100 kfl00319_0100_v1.1 (at1g11960 : 547.0) ERD (early-responsive to dehydration... 0.02 Orthogroups_2024-Update
Kfl00551_0030 kfl00551_0030_v1.1 (at1g30360 : 436.0) early-responsive to dehydration 4... 0.02 Orthogroups_2024-Update
MA_125601g0010 No alias (at1g30360 : 659.0) early-responsive to dehydration 4... 0.03 Orthogroups_2024-Update
Pp1s13_374V6 No alias early-responsive to dehydration erd 0.02 Orthogroups_2024-Update
Pp1s322_34V6 No alias early-responsive to dehydration erd 0.03 Orthogroups_2024-Update
Pp1s96_240V6 No alias early responsive to dehydration protein 0.02 Orthogroups_2024-Update
Seita.2G031800.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Sobic.009G258100.1 No alias calcium-permeable channel *(OSCA) 0.04 Orthogroups_2024-Update
evm.model.contig_4432.3 No alias (at1g32090 : 103.0) early-responsive to dehydration... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR027815 PHM7_cyt 199 361
IPR003864 RSN1_7TM 372 644
IPR032880 Csc1_N 7 178
No external refs found!