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  5. Seita.9G342900.1

Seita.9G342900.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G342900.1
Cluster HCAA Clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
236978 No alias expansin A16 0.02 Orthogroups_2024-Update
91129 No alias expansin A15 0.02 Orthogroups_2024-Update
A4A49_26925 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.04 Orthogroups_2024-Update
At5g39260 No alias Expansin-A21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL81] 0.03 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.02 Orthogroups_2024-Update
HORVU3Hr1G081180.2 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
LOC_Os05g19570 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_61945g0010 No alias (q40636|expa2_orysa : 398.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.03 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.02 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen03g034870 No alias Pollen allergen 0.03 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 67 153
IPR007117 Expansin_CBD 165 243
No external refs found!