Seita.9G371600.1

Description : component *(uS2) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.9G371600.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
36118	No alias	40s ribosomal protein SA	0.09	Orthogroups_2024-Update
Bradi1g20880	No alias	40s ribosomal protein SA B	0.12	Orthogroups_2024-Update
Bradi1g23780	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
Bradi1g60310	No alias	40s ribosomal protein SA B	0.13	Orthogroups_2024-Update
Bradi1g72480	No alias	40s ribosomal protein SA B	0.09	Orthogroups_2024-Update
Brara.B02024.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.D01465.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Brara.G02358.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.G03124.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Cre10.g432800	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
GRMZM2G092719	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
GRMZM2G099657	No alias	40s ribosomal protein SA B	0.02	Orthogroups_2024-Update
GRMZM2G126821	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
GRMZM2G145308	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
GRMZM2G159237	No alias	40s ribosomal protein SA B	0.05	Orthogroups_2024-Update
Glyma.07G043800	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
Glyma.08G159800	No alias	40s ribosomal protein SA B	0.06	Orthogroups_2024-Update
Glyma.15G267100	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
Glyma.16G012200	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
HORVU2Hr1G030880.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
HORVU4Hr1G077240.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
MA_8926440g0010	No alias	(o22518\|rssa_soybn : 186.0) 40S ribosomal protein SA...	0.02	Orthogroups_2024-Update
Mp2g26290.1	No alias	component RPSa of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00044639-RA	No alias	(o80377\|rssa_dauca : 414.0) 40S ribosomal protein SA...	0.03	Orthogroups_2024-Update
Potri.001G164000	No alias	40s ribosomal protein SA	0.08	Orthogroups_2024-Update
Potri.003G071200	No alias	40s ribosomal protein SA B	0.06	Orthogroups_2024-Update
Potri.012G117600	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
Potri.015G112900	No alias	40s ribosomal protein SA	0.09	Orthogroups_2024-Update
Pp1s173_16V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s48_103V6	No alias	40s ribosomal protein sa	0.05	Orthogroups_2024-Update
Pp1s59_133V6	No alias	40s ribosomal protein sa	0.02	Orthogroups_2024-Update
Sobic.002G374900.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Sobic.002G375100.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Sobic.005G229300.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc03g019780	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC)	0.04	Orthogroups_2024-Update
Solyc06g072120	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC)	0.11	Orthogroups_2024-Update
Sopen03g029850	No alias	Ribosomal protein S2	0.09	Orthogroups_2024-Update
Sopen06g028410	No alias	Ribosomal protein S2	0.11	Orthogroups_2024-Update
evm.model.contig_4456.25	No alias	(o22518\|rssa_soybn : 282.0) 40S ribosomal protein SA...	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000120	RNA polymerase I transcription factor complex	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003724	RNA helicase activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003896	DNA primase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Predicted GO
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030488	tRNA methylation	IEP	Predicted GO
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Predicted GO
BP	GO:0032259	methylation	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0034708	methyltransferase complex	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043527	tRNA methyltransferase complex	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	23	116
IPR001865	Ribosomal_S2	122	187

External Links

No external refs found!

Seita.9G371600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation