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  5. Solyc03g113150

Solyc03g113150


Description : Pectate lyase (AHRD V3.3 *** K4BKG8_SOLLC)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g113150
Cluster HCCA clusters: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
At1g14420 No alias Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] 0.03 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.G00648.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Glyma.19G020200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
MA_10430145g0020 No alias (at5g48900 : 488.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Mp8g10190.1 No alias pectate lyase 0.02 Orthogroups_2024-Update
PSME_00033127-RA No alias (at5g63180 : 426.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Solyc05g007080 No alias Alpha-amylase (AHRD V3.3 *** K4BWN3_SOLLC) 0.04 Orthogroups_2024-Update
Solyc05g055510 No alias Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 172 352
IPR007524 Pec_lyase_N 24 76
No external refs found!