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  5. Seita.9G402800.1

Seita.9G402800.1


Description : ATPase component *(Ino80) of chromatin remodelling complex


Gene families : OG_42_0006128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G402800.1
Cluster HCAA Clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
444050 No alias INO80 ortholog 0.02 Orthogroups_2024-Update
Bradi1g62320 No alias INO80 ortholog 0.04 Orthogroups_2024-Update
GRMZM2G469162 No alias INO80 ortholog 0.03 Orthogroups_2024-Update
Glyma.03G133700 No alias INO80 ortholog 0.04 Orthogroups_2024-Update
Glyma.19G136000 No alias INO80 ortholog 0.04 Orthogroups_2024-Update
LOC_Os03g22900 No alias SNF2 family N-terminal domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_3312g0010 No alias (at3g57300 : 1489.0) Encodes the Arabidopsis INO80... 0.04 Orthogroups_2024-Update
Mp8g00130.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.04 Orthogroups_2024-Update
Pp1s304_7V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update
Pp1s45_2V6 No alias chromatin remodeling complex subunit 0.01 Orthogroups_2024-Update
Sobic.001G370900.2 No alias ATPase component *(Ino80) of chromatin remodelling complex 0.03 Orthogroups_2024-Update
evm.model.contig_664.3 No alias (at3g57300 : 386.0) Encodes the Arabidopsis INO80... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 588 873
IPR020838 DBINO 346 475
IPR001650 Helicase_C 1189 1299
No external refs found!