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  5. Seita.9G408900.1

Seita.9G408900.1


Description : pre-60S ribosomal subunit assembly factor *(SSF1)


Gene families : OG_42_0005553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G408900.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At5g61770 No alias PETER PAN-like protein [Source:UniProtKB/TrEMBL;Acc:F4K3M1] 0.06 Orthogroups_2024-Update
Bradi1g62800 No alias PETER PAN-like protein 0.16 Orthogroups_2024-Update
Brara.F02052.1 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.15 Orthogroups_2024-Update
Cre10.g450879 No alias PETER PAN-like protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G046720.2 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.03 Orthogroups_2024-Update
Mp6g06030.1 No alias pre-60S ribosomal subunit assembly factor (SSF1) 0.04 Orthogroups_2024-Update
Potri.002G204900 No alias PETER PAN-like protein 0.07 Orthogroups_2024-Update
Potri.014G129700 No alias PETER PAN-like protein 0.02 Orthogroups_2024-Update
Pp1s22_59V6 No alias MAC9.8; Peter Pan - like protein [Arabidopsis thaliana] 0.05 Orthogroups_2024-Update
Sobic.001G376400.1 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.07 Orthogroups_2024-Update
Solyc01g096800 No alias PETER PAN-like protein (AHRD V3.3 *** AT5G61770.3) 0.19 Orthogroups_2024-Update
Sopen01g040500 No alias Brix domain 0.03 Orthogroups_2024-Update
evm.model.contig_4461.11 No alias (at5g61770 : 211.0) PETER PAN-like protein (PPAN);... 0.02 Orthogroups_2024-Update
evm.model.tig00020912.43 No alias (at5g61770 : 80.1) PETER PAN-like protein (PPAN);... 0.02 Orthogroups_2024-Update
evm.model.tig00020912.51 No alias (at5g61770 : 257.0) PETER PAN-like protein (PPAN);... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 53 296
No external refs found!