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  5. Seita.9G428300.1

Seita.9G428300.1


Description : plastidial transcript stability factor *(HCF107)


Gene families : OG_42_0005803 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G428300.1
Cluster HCAA Clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
A4A49_20351 No alias protein high chlorophyll fluorescent 107 0.02 Orthogroups_2024-Update
At3g17040 No alias Protein high chlorophyll fluorescent 107... 0.08 Orthogroups_2024-Update
Brara.E02474.1 No alias plastidial transcript stability factor *(HCF107) 0.04 Orthogroups_2024-Update
Cre09.g416200 No alias high chlorophyll fluorescent 107 0.02 Orthogroups_2024-Update
Glyma.07G240000 No alias high chlorophyll fluorescent 107 0.04 Orthogroups_2024-Update
Glyma.17G033400 No alias high chlorophyll fluorescent 107 0.05 Orthogroups_2024-Update
LOC_Os03g19560 No alias tetratricopeptide repeat domain containing protein, expressed 0.04 Orthogroups_2024-Update
Sobic.001G394800.1 No alias plastidial transcript stability factor *(HCF107) 0.04 Orthogroups_2024-Update
evm.model.contig_2662.1 No alias (at3g17040 : 88.6) It is a RNA tetratricopeptide... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007854 Fip1_dom 185 223
IPR019734 TPR_repeat 1119 1144
No external refs found!