1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G446600.1

Seita.9G446600.1


Description : subfamily ABCC transporter


Gene families : OG_42_0000076 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G446600.1
Cluster HCAA Clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
147933 No alias multidrug resistance-associated protein 4 0.02 Orthogroups_2024-Update
169678 No alias multidrug resistance-associated protein 6 0.02 Orthogroups_2024-Update
Brara.J00233.1 No alias subfamily ABCC transporter 0.03 Orthogroups_2024-Update
Glyma.03G167800 No alias multidrug resistance-associated protein 5 0.04 Orthogroups_2024-Update
Kfl00087_0010 kfl00087_0010_v1.1 (at1g04120 : 1157.0) encodes a high-affinity inositol... 0.02 Orthogroups_2024-Update
Kfl00337_0010 kfl00337_0010_v1.1 (at1g30420 : 370.0) member of MRP subfamily; multidrug... 0.02 Orthogroups_2024-Update
Mp5g13190.1 No alias subfamily ABCC transporter 0.02 Orthogroups_2024-Update
PSME_00011253-RA No alias (at1g04120 : 384.0) encodes a high-affinity inositol... 0.03 Orthogroups_2024-Update
PSME_00042896-RA No alias (at3g62700 : 1204.0) member of MRP subfamily; multidrug... 0.03 Orthogroups_2024-Update
PSME_00050839-RA No alias (at3g62700 : 174.0) member of MRP subfamily; multidrug... 0.02 Orthogroups_2024-Update
Pp1s223_76V6 No alias multidrug resistance protein abc transporter family 0.02 Orthogroups_2024-Update
Pp1s540_4V6 No alias multidrug resistance protein abc transporter family 0.02 Orthogroups_2024-Update
Seita.5G122800.1 No alias subfamily ABCC transporter 0.03 Orthogroups_2024-Update
Sopen11g025470 No alias ABC transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 947 1191
IPR011527 ABC1_TM_dom 326 589
IPR003439 ABC_transporter-like 1281 1429
IPR003439 ABC_transporter-like 654 788
No external refs found!