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  5. Seita.9G473700.1

Seita.9G473700.1


Description : component *(Snu13) of snoRNP rRNA methylation complex & component *(SNU13) of spliceosomal U4/U6 snRNP


Gene families : OG_42_0002599 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G473700.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
159569 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 Orthogroups_2024-Update
At4g12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein... 0.04 Orthogroups_2024-Update
At4g22380 No alias At4g22380 [Source:UniProtKB/TrEMBL;Acc:Q8LCC7] 0.04 Orthogroups_2024-Update
At5g20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein... 0.07 Orthogroups_2024-Update
Bradi1g68505 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.15 Orthogroups_2024-Update
Bradi3g21230 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Orthogroups_2024-Update
Brara.A01257.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.11 Orthogroups_2024-Update
Brara.B02667.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.13 Orthogroups_2024-Update
Brara.C02711.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.18 Orthogroups_2024-Update
Brara.I02254.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.23 Orthogroups_2024-Update
Cre06.g249250 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.13 Orthogroups_2024-Update
Glyma.13G167800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Orthogroups_2024-Update
Glyma.17G115400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.14 Orthogroups_2024-Update
LOC_Os10g03540 No alias ribosomal protein L7Ae, putative, expressed 0.02 Orthogroups_2024-Update
MA_10201g0010 No alias (at4g22380 : 198.0) Ribosomal protein... 0.11 Orthogroups_2024-Update
PSME_00009756-RA No alias (at4g22380 : 194.0) Ribosomal protein... 0.1 Orthogroups_2024-Update
PSME_00035580-RA No alias (at4g22380 : 198.0) Ribosomal protein... 0.14 Orthogroups_2024-Update
Potri.013G116800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
Potri.019G087100 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.09 Orthogroups_2024-Update
Sobic.001G513500.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 22 111
No external refs found!